BioLib 2.0.0

.NET 6.0 This package targets .NET 6.0. The package is compatible with this framework or higher.
There is a newer version of this package available.
See the version list below for details. 
dotnet add package BioLib --version 2.0.0                

                    
                

            
NuGet\Install-Package BioLib -Version 2.0.0
This command is intended to be used within the Package Manager Console in Visual Studio, as it uses the NuGet module's version of Install-Package. 
<PackageReference Include="BioLib" Version="2.0.0" />
For projects that support PackageReference, copy this XML node into the project file to reference the package. 
paket add BioLib --version 2.0.0                

                    
                

            
#r "nuget: BioLib, 2.0.0"
#r directive can be used in F# Interactive and Polyglot Notebooks. Copy this into the interactive tool or source code of the script to reference the package. 
// Install BioLib as a Cake Addin
#addin nuget:?package=BioLib&version=2.0.0

// Install BioLib as a Cake Tool
#tool nuget:?package=BioLib&version=2.0.0

BioLib

Nuget DOI

A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions. Supports Windows, Linux and Mac. Check out the documentation.

Usage

//First call BioImage.Initialize to 
//initialize the Bioformats library.
BioImage.Initialize();

//Once initialized you can open OME, ImageJ tiff files, and Bio Tiff files with:
BioImage b = BioImage.OpenFile("file");

//Or if you want to use specifically the OME image reader you can use BioImage.OpenOME
BioImage b = BioImage.OpenOME("file");

//If you are working with a pyramidal image you can open a portion of a tiled image with OpenOME.
//BioImage.OpenOME(string file, int serie, bool tab, bool addToImages, bool tile, int tilex, int tiley, int tileSizeX, int tileSizeY)

//You can specify whether to open in a newtab as well as whether to add the image to 
//the Images.images table. As well as specify whether to open as a tile with the specified 
//tile X,Y position & tile width & height.    
BioImage.OpenOME("file",0,false,false,true,0,0,600,600);
//This will open a portion of the image as a tile and won't add it to the Images table.

//Once you have opened a tiled image with BioImage.OpenOME you can call the 
//GetTile(BioImage b, ZCT coord, int serie, int tilex, int tiley, int tileSizeX, int tileSizeY) method
// to quickly get another tile from different portion of the image. For BioGTK & BioLib
Bitmap bm = GetTile(b, new ZCT(0,0,0), 0, 100, 100, 600, 600);

//You can display an image with the ImageView control which can display
// Pyramidal, Whole-Slide, and Series of images.
ImageView v = ImageView.Create(b);

//To get the current coordinate of the ImageView you can call GetCoordinate.
ZCT cord = v.GetCoordinate();
//or to set the current coordinate
v.SetCoordinate(new ZCT(1,1,1));

//To create a point as well as any other ROI type you can call the ROI create methods.
ROI p = ROI.CreatePoint(cord, 0, 0);
ROI rect = ROI.CreateRectangle(cord, 0, 0, 100, 100);

//Usage of Graphics class for 16 & 48 bit images as well as regular bit depth images
//is very similar to System.Graphics.
//We create a new Graphics object by passing the Bitmap for BioGTK & BioLib and BufferInfo for BioCore
Graphics g = Graphics.FromImage(b.Buffers[0]);

//Then we create a pen by passing a ColorS which represent a Color with, 
//a higher bit depth (unsigned short) rather than a byte.
g.pen = new Pen(new ColorS(ushort.MaxValue, ushort.MaxValue, ushort.MaxValue));

//Then we can call the familiar methods DrawLine, DrawPolygon, FillPolygon etc.
g.DrawLine(0,0,100,100);
//Finally we dispose the Graphics object.
g.Dispose();

//We can also save the resulting image given the ID of the image in the Images table.
//All images opened with BioImage.OpenFile or BioImage.OpenOME are added to the 
//Images.images table with the filename as an ID.
BioImage.SaveFile("file","path");

//To convert between different pixel formats we can call for example To24Bit.
b.To24Bit();
Product Compatible and additional computed target framework versions.
.NET net6.0 is compatible.  net6.0-android was computed.  net6.0-ios was computed.  net6.0-maccatalyst was computed.  net6.0-macos was computed.  net6.0-tvos was computed.  net6.0-windows was computed.  net7.0 was computed.  net7.0-android was computed.  net7.0-ios was computed.  net7.0-maccatalyst was computed.  net7.0-macos was computed.  net7.0-tvos was computed.  net7.0-windows was computed.  net8.0 was computed.  net8.0-android was computed.  net8.0-browser was computed.  net8.0-ios was computed.  net8.0-maccatalyst was computed.  net8.0-macos was computed.  net8.0-tvos was computed.  net8.0-windows was computed. 
Compatible target framework(s)
Included target framework(s) (in package)
Learn more about Target Frameworks and .NET Standard.

NuGet packages (3)

Showing the top 3 NuGet packages that depend on BioLib:

Package Downloads
BioCore

A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
BioGTK

A .NET application & library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions. Supports Windows, Linux and Mac.
BioImager

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supported libraries include Prior® & Zeiss® & all devices supported by Micromanager 2.0 and python-microscope.

GitHub repositories

This package is not used by any popular GitHub repositories.

Version Downloads Last updated
2.9.0.1 77 10/29/2024
2.9.0 71 10/29/2024
2.8.0 125 10/19/2024
2.7.3.2 90 10/10/2024
2.7.3.1 85 10/10/2024 2.7.3.1 is deprecated because it has critical bugs.
2.7.3 106 10/10/2024
2.7.2.1 94 10/1/2024
2.7.2 83 9/29/2024
2.7.1 97 9/28/2024
2.7.0.1 86 9/1/2024
2.7.0 92 8/29/2024
2.6.0 128 8/21/2024
2.5.0 97 7/26/2024
2.4.1 112 7/7/2024
2.4.0 97 5/2/2024
2.3.0 116 4/23/2024
2.2.1 142 2/17/2024
2.2.0 105 2/17/2024
2.1.0 140 2/10/2024
2.0.0 114 2/2/2024
1.9.0 167 12/24/2023
1.8.0 200 11/2/2023
1.7.0 433 9/1/2023
1.6.2 412 8/22/2023
1.6.1 388 8/19/2023
1.6.0 434 8/6/2023
1.5.2 446 8/2/2023
1.5.1 433 7/9/2023
1.5.0 415 7/8/2023
1.4.1 396 6/27/2023
1.4.0 356 5/15/2023
1.3.2 442 4/12/2023
1.3.1 482 4/1/2023
1.3.0 491 3/7/2023
1.2.1 535 3/4/2023
1.2.0 541 3/2/2023
1.1.1 488 3/2/2023
1.1.0 480 3/1/2023
1.0.0 244 3/1/2023

QuPath GeoJson ROI support, Bioformats Arm64 Support.